Issues

• Windows pip install fail: UnicodeDecodeError: 'charmap' codec can't decode byte

  user support
  biocore/empress#572 · Filter by author niemasd opened on Sep 23, 2026
  1

• empress and rachis-qiime2-2026.7

  bugrefactoringuser support
  biocore/empress#571 · Filter by author ARW-UBT opened on Aug 28, 2026
  2

• qiime2-amplicon-2025.7 module 'skbio.diversity.alpha' has no attribute 'sobs' error

  user support
  biocore/empress#570 · Filter by author ankurnaqib opened on Jan 9, 2026
  1

• Save currrent HTML view as HTML

  feature request
  biocore/empress#568 · Filter by author YasinEl opened on Jan 23, 2025
  3

• Qiime2-2024.5 and empress - scikit-bio issue

  user support
  biocore/empress#566 · Filter by author ARW-UBT opened on Oct 25, 2024
  4

• Fix builds and tests

  logistics
  biocore/empress#564 · Filter by author fedarko opened on Aug 3, 2024
  1

• numpy 2 breaks the int-encoding representation of the BP tree

  bugdocumentation
  biocore/empress#562 · Filter by author fedarko opened on Aug 3, 2024

• Option to overwrite existing directory

  feature requestgood first issue
  biocore/empress#558 · Filter by author gibsramen opened on May 20, 2022
  4

  

• Race condition / itermittent failure in one of the barplot tests

  bugtesting
  biocore/empress#557 · Filter by author fedarko opened on May 20, 2022

• Support discretization as an alternative to continuous coloring

  barplotsfeature request
  biocore/empress#556 · Filter by author fedarko opened on May 18, 2022

• Adding midpoint coloring

  feature request
  biocore/empress#554 · Filter by author mortonjt opened on Feb 2, 2022
  1

• Allow settings import/export

  feature request
  biocore/empress#551 · Filter by author jwdebelius opened on Nov 18, 2021
  6

• Adding info on feature metadata format in README

  documentation
  biocore/empress#548 · Filter by author Robaina opened on Oct 20, 2021
  3

• Add convenience method to empress.js that gets the 0-based index of a feature metadata column

  good first issuenice to haverefactoring
  biocore/empress#546 · Filter by author fedarko opened on Aug 12, 2021

• Possible for Empress tree coloring to break when using timed events in Empire plots

  bugemperor-integration
  biocore/empress#542 · Filter by author fedarko opened on Jul 31, 2021

• Continue legend overflow on new line

  feature request
  biocore/empress#534 · Filter by author kwcantrell opened on Jul 17, 2021
  1

• Don't resize legend when changing non-color-related things?

  feature request
  biocore/empress#533 · Filter by author fedarko opened on Jul 17, 2021

• Need to un-hide "Update" buttons when enabling sample / feature metadata coloring tabs after finishing an animation

  bug
  biocore/empress#532 · Filter by author fedarko opened on Jul 17, 2021

• Error when running with greengenes taxonomy files, integer ID field causes type issue

  bug
  biocore/empress#531 · Filter by author mstapylton opened on Jul 13, 2021
  4

• set the min, middle, max value of the colorbar

  feature request
  biocore/empress#529 · Filter by author maque4004 opened on Jun 30, 2021
  2

• Length legends' SVG exporting logic doesn't account for long titles

  barplotsbug
  biocore/empress#528 · Filter by author fedarko opened on Jun 23, 2021
  

• Inconsistent state after barplot errors

  barplotsbug
  biocore/empress#526 · Filter by author fedarko opened on Jun 12, 2021
  2

• Separate McHelper into a separate GitHub action from the Main CI

  good first issuelogisticsnice to have
  biocore/empress#524 · Filter by author fedarko opened on Jun 7, 2021

• Center diverging colormaps at 0

  feature request
  biocore/empress#518 · Filter by author jwdebelius opened on May 26, 2021
  3

• Fix resizing in main legend when coloring tree by feature metadata gradient with non-numeric warning message

  buggood first issuenice to have
  biocore/empress#515 · Filter by author fedarko opened on May 13, 2021