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'platform_info' missing #562
Description
@dougollerenshaw @nickponvert
Hi, convert code fails for the following 2 mesoscope sessions :
session_id:
845444695
846652517
The error is copied below: (get_device_info, and then computer name seems to be missing)
Can we fix this?
Thanks.
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/ophys/io/convert_level_1_to_level_2.py", line 973, in convert_level_1_to_level_2
core_data = get_core_data(pkl, timestamps_stimulus)
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/ophys/io/convert_level_1_to_level_2.py", line 416, in get_core_data
core_data = foraging2.data_to_change_detection_core(pkl, time=timestamps_stimulus)
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/translator/foraging2/init.py", line 81, in data_to_change_detection_core
"metadata": data_to_metadata(data),
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/translator/foraging2/init.py", line 162, in data_to_metadata
device_name = get_device_name(data)
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/translator/foraging2/extract.py", line 1123, in get_device_name
return exp_data['platform_info']['computer_name']
KeyError: 'platform_info'
Activity
nickponvert commentedon May 18, 2019
@farznaj I'm working on a PR (#558) to use the
allensdkto get the well-known stimulus pickle file that is tracked in LIMS for each session (which should have this field). Would you be able to check out branchfix/issue533and test this again to see if it fixes it?farznaj commentedon May 20, 2019
@nickponvert Hey Nick; thanks for your response. I tried it. It failed now for a different reason, copied below:
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/ophys/io/convert_level_1_to_level_2.py", line 414, in get_core_data
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/translator/foraging/init.py", line 40, in data_to_change_detection_core
handler = ListHandler(log_messages)
File "/home/farzaneh/Documents/analysis_codes/visual_behavior_analysis/visual_behavior/utilities.py", line 174, in init
super(ListHandler, self).init()
TypeError: super(type, obj): obj must be an instance or subtype of type
nickponvert commentedon Jan 22, 2020
@farznaj let's resurrect this and see if it is still a problem or can be closed. Please give it a shot running VBA on the master branch.
farznaj commentedon Jan 22, 2020
hi nick; these were ophys 7 sessions that missed the platform information.
nickponvert commentedon Jan 22, 2020
ok great. I'm working on some spring cleaning, so let's close this.