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1. protein_set_transformer protein_set_transformer Public

   Forked from cody-mar10/protein_set_transformer

   Protein Set Transformer (PST) framework for training protein-language-model-based genome language models. Inference is possible for viral genomes using our pretrained viral foundation model.

   Jupyter Notebook 17 2

2. vRhyme vRhyme Public

   Binning Virus Genomes from Metagenomes

   Python 75 14

3. VIBRANT VIBRANT Public

   Virus Identification By iteRative ANnoTation

   Python 198 40

4. PropagAtE PropagAtE Public

   Prophage Activity Estimator

   Python 33 4

5. METABOLIC METABOLIC Public

   A scalable high-throughput metabolic and biogeochemical functional trait profiler

   Perl 227 55

6. vClassifier vClassifier Public

   Species-level taxonomic classification of viruses

   Shell 6