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HighlanderLab

Software for the management and improvement of populations using data science, genetics, and breeding

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  1. jbancic_alphasimr_plants jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HTML 33 18

  2. RandPedPCA RandPedPCA Public

    Principal Component Analysis of Pedigree Relationship Matrix via Randomized SVD

    Jupyter Notebook 7 5

  3. jbancic_GEIsim jbancic_GEIsim Public

    This repository contains examples of code for simulating genotype by environment interaction

    R 5 1

  4. EUCARPIA2025BiometricsPlantBreeding EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    Ruby 5 2

  5. SIMplyBee SIMplyBee Public

    SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

    R 3 6

  6. nlubanga_tea_breeding_gs nlubanga_tea_breeding_gs Public archive

    Simulation of tea breeding programmes using genomic selection

    R 3 1

Repositories

Showing 10 of 71 repositories
  • RcppTskit Public

    R access to the tskit C API

    HighlanderLab/RcppTskit's past year of commit activity
    C 3 5 15 1 Updated Aug 20, 2026
  • AlphaPeel Public Forked from AlphaGenes/AlphaPeel

    AlphaPeel: calling, phasing, and imputing genotype and sequence data in pedigrees

    HighlanderLab/AlphaPeel's past year of commit activity
    Python 0 MIT 12 0 0 Updated Aug 7, 2026
  • AlphaImpute2 Public Forked from AlphaGenes/AlphaImpute2

    AlphaImpute2: pedigree- and population-based genotype imputation

    HighlanderLab/AlphaImpute2's past year of commit activity
    Python 0 MIT 9 0 0 Updated Aug 7, 2026
  • lstrachan_patrilines Public

    This repository contain R scripts that TODO

    HighlanderLab/lstrachan_patrilines's past year of commit activity
    R 0 1 1 0 Updated Jun 24, 2026
  • tinyhouse Public Forked from AlphaGenes/tinyhouse

    tinyhouse: Internal (house) functions used across many AlphaGenes tools

    HighlanderLab/tinyhouse's past year of commit activity
    Python 0 7 0 0 Updated Jun 13, 2026
  • mirror_repositories Public
    HighlanderLab/mirror_repositories's past year of commit activity
    0 0 0 0 Updated May 12, 2026
  • AlphaSimR Public Forked from gaynorr/AlphaSimR

    R package for breeding program simulations

    HighlanderLab/AlphaSimR's past year of commit activity
    R 0 29 16 2 Updated May 4, 2026
  • shiny-k-mers Public Forked from hannesbecher/shiny-k-mers

    Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)

    HighlanderLab/shiny-k-mers's past year of commit activity
    R 0 GPL-3.0 3 0 0 Updated Apr 27, 2026
  • AlphaFamImpute Public Forked from AlphaGenes/AlphaFamImpute
    HighlanderLab/AlphaFamImpute's past year of commit activity
    Python 1 MIT 2 0 0 Updated Apr 20, 2026
  • AlphaAssign Public Forked from AlphaGenes/AlphaAssign
    HighlanderLab/AlphaAssign's past year of commit activity
    Roff 0 MIT 2 0 0 Updated Apr 20, 2026
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