pyrevolve depends on a GPL library #61

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1. mmohrhard commented on Jun 10, 2023

   

   mmohrhard

   on Jun 10, 2023

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   The following patch is the one that I use for our internal builds:

   From e8d297e4e948129d2ee06497c1175852cad57eb9 Mon Sep 17 00:00:00 2001
   From: Markus Mohrhard <markusm@dug.com>
   Date: Sat, 10 Jun 2023 22:15:26 +0800
   Subject: [PATCH] remove GPL dependency
   
   ---
    pyrevolve/compression.py | 6 +-----
    setup.py                 | 2 +-
    2 files changed, 2 insertions(+), 6 deletions(-)
   
   diff --git a/pyrevolve/compression.py b/pyrevolve/compression.py
   index 915db5c..f8569cb 100644
   --- a/pyrevolve/compression.py
   +++ b/pyrevolve/compression.py
   @@ -1,5 +1,4 @@
    import numpy as np
   -from contexttimer import Timer
    from functools import partial
    import pickle
    
   @@ -69,15 +68,12 @@ def blosc_compress(params, indata):
        s = indata.tostring()
        chunk_size = params.get('chunk_size')
        chunked = [s[i:i+chunk_size] for i in range(0, len(s), chunk_size)]
   -    time = 0
        size = 0
        compressed = bytes()
        chunk_sizes = []
        for chunk in chunked:
   -        with Timer(factor=1000) as t:
   -            c = blosc.compress(chunk)
   +        c = blosc.compress(chunk)
            compressed += c
   -        time += t.elapsed
            size += len(c)
            chunk_sizes.append(len(c))
        metadata = {'shape': indata.shape, 'dtype': indata.dtype,
   diff --git a/setup.py b/setup.py
   index dd55ffb..1d9d020 100644
   --- a/setup.py
   +++ b/setup.py
   @@ -36,7 +36,7 @@ with open("README.md", "r") as fh:
        long_description = fh.read()
    
    s_required = ["cython>=0.17", "versioneer"]
   -i_required = ["contexttimer"]
   +i_required = []
    
    configuration = {
        'name': 'pyrevolve',
   -- 
   2.17.0