// [2] Prepare data
string seq = @"GACGCCGCCGCCACCACCGCCACCGCCGCAGCAGAAGCAGCGCACCGCAGGAGGGAAG";
seq.ToString();
Sequence sequence = new Sequence(Alphabets.DNA, seq);
// [3] Create and configure service handler
EbiWuBlastHandler blastService = new EbiWuBlastHandler();
// NCBIBlastHandler blastService = new NCBIBlastHandler();
ConfigParameters configParams = new ConfigParameters();
configParams.UseBrowserProxy = true;
blastService.Configuration = configParams;
// [4] Define query.
BlastParameters searchParams = new BlastParameters();
searchParams.Add("Program", "blastn");
searchParams.Add("Database", "em_rel");
searchParams.Add("Expect", "1e-10");
//searchParams.Add("Email", "YourAddress@YourInstitution");
// [5] create and submit request
string jobID;
try
{
jobID = blastService.SubmitRequest(sequence, searchParams);
}
catch (Exception ex)
{
Console.WriteLine("Service is not available.");
Console.WriteLine(ex);
return;
}
// [6] Wait for Ready status
ServiceRequestInformation info = blastService.GetRequestStatus(jobID);
if (info.Status != ServiceRequestStatus.Waiting
&& info.Status != ServiceRequestStatus.Ready)
{
Console.WriteLine("Service is not ready or waiting.");
return;
}
int maxAttempts = 10;
int attempt = 1;
while (attempt <= maxAttempts
&& info.Status != ServiceRequestStatus.Error
&& info.Status != ServiceRequestStatus.Ready)
{
++attempt;
info = blastService.GetRequestStatus(jobID);
Thread.Sleep(
info.Status == ServiceRequestStatus.Waiting
|| info.Status == ServiceRequestStatus.Queued
? 20000 * attempt
: 0);
}
// [7] Get results
IList<BlastResult> results2 =
blastService.FetchResultsSync(jobID, searchParams) as List<BlastResult>;
I'm running this code mentioned in MBF programming guide but it is giving me an error that sequence type parameter is required: Service not available
// [2] Prepare data
string seq = @"GACGCCGCCGCCACCACCGCCACCGCCGCAGCAGAAGCAGCGCACCGCAGGAGGGAAG";
seq.ToString();
Sequence sequence = new Sequence(Alphabets.DNA, seq);
I'm running this code mentioned in MBF programming guide but it is giving me an error that sequence type parameter is required: Service not available