All pull requests

Pull requests

• Add help page for pangenomics workflow

  #2807·ivagljiva opened Sep 10, 2026Contributor·

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• Anvi-run-antismash and anvi-script-gen-antismash-matrix

  feature
  #2745·jessika-fuessel opened Jul 9, 2026Contributor·

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• Add anvi-export-genome-specific-trna-modifications

  #2719·tucker4 opened Jun 8, 2026Contributor·

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  1

  

• Enable metabolism framework tests

  #2713·ulgens opened Jun 7, 2026Collaborator·

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  6

• Lazy snv access

  #2691·FlorianTrigodet opened May 28, 2026Contributor·

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  3

  

• Port anvi'o to Python 3.13

  #2681·bcoltman opened May 24, 2026Contributor·

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  19

  

• anvi-report-indels: track mobile indels

  hackathon 2026
  #2673·FlorianTrigodet opened May 22, 2026Contributor·

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  5

• Add anvi-screw-you: It empathizes with the user once they are frustrated

  hackathon 2026
  #2671·sarilog opened May 22, 2026Contributor·

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  2

• Add modifications parsing from MM and ML tags in BAMs during anvi-profile

  hackathon 2026
  #2663·Ge0rges opened May 21, 2026Collaborator·

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  1

  10

  

• Add first-class PHROGs support via anvi-setup-phrogs and anvi-run-phrogs

  hackathon 2026
  #2649·Ge0rges with CopilotAI opened May 20, 2026·

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  1

  4

  

• Profile read clipping events from BAM files

  hackathon 2026
  #2645·FlorianTrigodet opened May 20, 2026Contributor·

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• General implementation for annotation with user-defined databases

  hackathon 2026
  #2644·l-gallucci opened May 20, 2026Contributor·

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  2

• anvi-compute-functional-consensus: *FunctionalConsensus classes

  hackathon 2026
  #2633·ChiaraVanni opened May 20, 2026Contributor·

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  1

• Python 3.14 support

  #2628·ulgens opened May 20, 2026Collaborator·

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• Add Python 3.11 support

  #2625·ulgens opened May 20, 2026Collaborator·

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  1

  

• Enrich ruff rules

  #2592·ulgens opened Apr 30, 2026Collaborator·

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  1

• Don't override default ruff rules selection

  #2582·ulgens opened Apr 28, 2026Collaborator·

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  3

• remove prodigal driver and multithread class

  #2536·FlorianTrigodet opened Feb 2, 2026Contributor·

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  1

  

• tRNA taxonomy v226

  #2492·FlorianTrigodet opened Nov 10, 2025Contributor·

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  8

  

• Bump scikit-learn from 1.2.2 to 1.6.0

  dependenciespython
  #2459·dependabot[bot] opened Jul 30, 2025Bot·

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• DGR_Finder PR

  #2452·katysloz opened Jul 8, 2025Contributor·

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• Allow Amino Acid Contig Databases

  #2427·Kekananen opened Apr 24, 2025Contributor·

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  3

• Foldseek driver + Structure base Pangenome

  #2364·metehaansever opened Oct 30, 2024Contributor·

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  21

• Genomeview merge debugging

  #1966·meren opened Aug 9, 2022Member·

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  12

• Anvi'o backend for 'genome view'

  #1712·meren opened Apr 12, 2021Member·

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  16