Welcome to bfast.

**This repository is no longer maintained. You should really not use this unless you have SOLiD sequencing data, which has not been generated for a long time.  Please use other aligners like bwa, bowtie, etc.  Issues and pull requests will be ignored.**


bfast is copyrighted software. Please see the file LICENSE for details.

For manual pages, including installation directions, please see:
manual/bfast-book.pdf