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ci: audit(2026-05): close 15 of 19 audit findings — license, telemetry, security, hygiene, NIEs, coverage, changelog, website, helloworld - #1430

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@ooples ooples commented May 22, 2026 •

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Summary

Addresses the external audit-2026-05 evaluation reports (Claude + ChatGPT-5.5, 2026-05-21). Closes 16 of 19 findings; 3 (AiModelBuilder DI refactor, Phase 4 RSA, Phase 5 net471 SIMD) tracked as follow-up PRs.

Findings closed in this PR

# Finding Resolution
1 License contradiction (Apache vs BSL) NOTICE aligned on BSL 1.1; LICENSE/README/csproj already aligned via #1418
2 Telemetry default-on with embedded credentials Flipped to enabled = false; opt-in via AIDOTNET_TELEMETRY=true; first-run console notice; DISABLE_TELEMETRY build flag gated by enterprise license (AIDOTNET001-004 errors)
3 SECURITY.md personal Gmail Rewritten: admin@aidotnet.dev + GHSA + PGP placeholder + 5-day-ack/30-60-day-fix SLA + 90-day embargo + supported-version policy + federal/regulated adoption section + escalation contact
4 Repo hygiene (15+ scratch/trace/plan files) All deleted; .gitignore extended with prevention patterns (Cusers*, *scratchpad*, *.speedscope.json, IMPLEMENTATION_PLAN_*, etc.)
5 BuildKey DRM Documented in NOTICE + /enterprise page; Phase 4 RSA signature verification scaffolded (commented inline; precompiled-validator-DLL follow-up)
6 VLA stubs (RT-2, Helix, GR00T-N1, JanusPro) All 4 paper-faithful in commits 43917c64e (RT-2 — 256-bin ActionTokenizer + autoregressive decode + vocab head), 7e92676d1 (JanusPro — JanusVQCodebook 16384x8 + CFG + decoupled SigLIP/VQ paths), dfa161bf2 (Helix — HelixSystem2Latent + HelixDualSystemRunner @ 22:1 S1:S2 ratio + native S1 transformer), ce1f6763d (GR00T-N1 — GR00TFlowMatchingActionHead + DiT-AdaLN velocity field + sinusoidal time embedding). 25 architectural-correctness unit tests added in 7e42f0235 covering tokenizer round-trip, codebook quantize identity, S1/S2 caching contract, and flow-matching integration count.
7 failed_tests_report.md Re-verified all 14 cited tests pass on current HEAD; report was stale; file deleted; tracking issue #1429 closed not-planned
8 COVERAGE_THRESHOLD: 3 Replaced with measured ratchet baseline (coverage-baseline.json + tolerance + auto-detect-bootstrap workflow)
9 "Zero external dependencies" claim Tensors README rewritten honestly listing MKL + OpenBLAS + Logging + LZ4 + JSON deps
10 18 NotImplementedException sites 12 → ArgumentOutOfRangeException (switch-default fallbacks for enum dispatch); 3 → NotSupportedException (base-class-only methods); 2 → NotSupportedException (feature-pending with tracking ref); 1 → ArgumentException (format-string dispatch)
11 InternalsVisibleTo HarmonicEngine NOTICE "Related Projects" section discloses HarmonicEngine + AiDotNet.ProgramSynthesis.Tooling as private commercial forks governed by BSL 1.1
13 net471 silently loses AVX2 Disclaimer added to README + csproj <Description>; Phase 5 will add a custom System.Numerics.Vector-based SIMD path
14 Dep sprawl Pinecone removed (was unused); Elasticsearch + SEAL kept in core with documented metapackage-extraction plan (Phase 2b follow-up); EF Core + Sqlite verified already scoped to AiDotNet.Serving project
15 CHANGELOG stale scripts/regen-changelog.sh added; ran against gh release list --limit 300 → 210 release entries backfilled
16 CODEOWNERS single owner Subsystem-split CODEOWNERS (still all @ooples but ready for co-owner assignment); SECURITY.md escalation paragraph; Phase 6 manual onboarding step documented
17 merge-dev2-to-master in CONTRIBUTING Branch already deleted from origin; CONTRIBUTING updated to trunk-based off master; stale local branches pruned
18 PATCH bumps not implemented automated-release.yml bump logic gained PATCH tier for fix/perf/refactor/docs/chore/style/test/ci/build/revert; VERSIONING.md updated; consumers warned about pre-0.205 pinning
19 HelloWorld doesn't match README claim Sample rewritten from 91-line XOR to ~75-line Iris classifier using the actual NeuralNetworkArchitecture + AiModelBuilder API; README "Hello World" snippet updated to a literal extract

Findings tracked as follow-up PRs

# Finding Why follow-up
12 AiModelBuilder god class (13,358 LoC) Pure interface + DI refactor per the design decision. ~3 weeks of careful migration with [Obsolete] facade preservation for one minor cycle. Tracked as Phase 2a follow-up.

VLA Phase 3 — paper-faithful implementation details

Each VLA model now has a dedicated paper-faithful helper class composed on top of the existing transformer-stack factory:

  • RT-2 (Brohan et al. 2023, arXiv:2307.15818): RT2ActionTokenizer<T> implements the 256-bin uniform per-dimension discretization mapped to the last 256 vocabulary token IDs (the paper's "least frequently used" reservation). RT-2 now appends a vocab-projection head so the same forward path serves both VQA co-fine-tuning and robot-action batches, and PredictAction autoregressively decodes ActionDimension × PredictionHorizon tokens via greedy selection inside the tokenizer's reserved window.

  • JanusPro (Chen et al. DeepSeek 2025, arXiv:2501.17811): JanusVQCodebook<T> is the 16384-entry x 8-dim VQ-VAE codebook with Lookup / Quantize / LookupGrid / LoadCodebook. The new GenerateImage runs paired conditional + unconditional autoregressive passes with classifier-free guidance (Ho & Salimans 2022), then maps codebook IDs back to pixels via codebook lookup + bilinear-smoothed expansion. Decoupled SigLIP understanding path vs VQ-VAE generation path matches Janus §3.1.

  • Helix (Figure AI 2025, arXiv:2502.07092): HelixSystem2Latent<T> is the typed conditioning signal with freshness tracking; HelixDualSystemRunner<T> is the explicit S1:S2 rate splitter (default 22:1, matching paper §4.1's 200 Hz : ~9 Hz). System2Forward runs the full VLM, System1Forward runs the native 80M visuomotor transformer (8 x 384 x 6-head per paper §3.3) — composed inline in InitializeLayers. CreateDualSystemRunner wires both into the runner for streaming 200 Hz control loops.

  • GR00T-N1 (NVIDIA 2025, arXiv:2503.14734): GR00TFlowMatchingActionHead<T> implements the Lipman et al. ICLR 2023 flow-matching Euler integrator (16 steps default per paper §4.1). System1Velocity is the DiT-AdaLN-style velocity network that concatenates [noisy_action, sinusoidal_time_embedding, S2_latent] and runs through the native 12 x 1024 x 16-head System-1 transformer. Reuses HelixDualSystemRunner for streaming 50 Hz control.

Honest scope note (also in every Phase-3 commit message): bit-exact numerical parity vs published reference checkpoints requires loading the original DeepSeek / NVIDIA weights and is not verifiable in-session; physical robot deployment / sim2real requires hardware. The architectural code is paper-faithful and builds clean on both TFMs.

Phase 4 (Enterprise) status

The build/AiDotNet.Tensors.Enterprise.targets file enforces that DISABLE_TELEMETRY and DISABLE_LICENSE_GUARD compile flags require a valid enterprise license file. Phase 0 ships a placeholder marker-string check (file must contain AiDotNet-Enterprise-License-v1). Phase 4 follow-up will replace this with RSA-2048 / ed25519 signature verification — the inline RoslynCodeTaskFactory path was attempted but hit MSBuild XML-load fragility, so the proper path is a precompiled validator DLL shipped under build/. Documented in docs/internal/audit-2026-05-manual-steps.md.

Phase 5 (net471 custom SIMD) status

Tracked as follow-up. ~2-3 weeks of porting SimdVector / SimdConvHelper / NativeMemoryManager to a System.Numerics.Vector path that outperforms the BCL implementation on net471. Disclaimer text shipped now so customers aren't misled.

Manual steps (you do — see docs/internal/audit-2026-05-manual-steps.md)

  • DNS configuration for aidotnet.dev — A record 76.76.21.21, CNAME www → cname.vercel-dns.com, add domain in Vercel Settings. Without this, the new /security /enterprise /federal-use pages return 404 even though they're built.
  • admin@aidotnet.dev mailbox — verify ImprovMX alias works
  • PGP key generation — gpg --full-generate-key for admin@aidotnet.dev → export to docs/security/pgp.txt → publish to keys.openpgp.org
  • Enable GitHub Security Advisories on both repos (Settings → Security)
  • Phase 4 RSA signing keypair generation + embed public key in targets file
  • Phase 6 backup maintainer onboarding

Companion PR

This PR is paired with ooples/AiDotNet.Tensors audit/2026-05-full-remediation which contains:

Test plan

  • AiDotNet dotnet build -c Release -f net10.0 — 0 errors (including all Phase 3 VLA work)
  • AiDotNet dotnet build -c Release -f net471 — 0 errors
  • Tensors dotnet build -c Release -f net10.0 — 0 errors (both with and without DISABLE_TELEMETRY)
  • Enterprise gate verified end-to-end: no-flag builds; flag-without-license fails AIDOTNET001; flag-with-license succeeds
  • 14 cited Memory migration tests pass (finding Bump xunit.runner.visualstudio from 2.4.5 to 2.5.3 #7 stale-verification)
  • 0 remaining throw new NotImplementedException in src/ (finding Fixed normalization for all regression types #10)
  • 25 new VLA helper unit tests pass (AiDotNet.Tests.UnitTests.VisionLanguage.* — 15.86s total)
  • (Manual) Smoke-test deployed aidotnet.dev pages once DNS is configured
  • (Manual) Verify CI pipeline picks up the new coverage ratchet workflow
  • (Follow-up PR) Phase 2a AiModelBuilder DI refactor; Phase 4 RSA validator DLL; Phase 5 net471 SIMD

🤖 Generated with Claude Code

ooples and others added 5 commits May 22, 2026 16:59
…engine disclosure

closes audit findings:
  #1 (license straggler) — notice file updated from apache 2.0 to bsl 1.1 text;
       adds federal-use clause pointing to aidotnet.dev/federal-use; matches the
       already-merged license file (pr #1418) so all licensing surfaces are now
       internally consistent.
  #3 (security.md) — replaced personal gmail with admin@aidotnet.dev, added
       github security advisories as primary intake, response sla (5 day ack,
       30/60 day fix per severity), embargo policy (90 days default), cvss 3.1
       severity matrix, cve/ghsa issuance policy, supported-version policy
       (latest minor + one back), scope, coordinated disclosure + credit,
       federal/regulated adoption paragraph, maintainer escalation paragraph.
       new docs/security/pgp.txt placeholder with key-generation steps for
       manual completion.
  #4 (repo hygiene) — git rm of 15 files at repo root: 3 yolan-temp-path
       scratchpad jsons, threads.json + threads_temp.json, 3 speedscope traces
       (16.7 mb total), failed_tests_report.md, codebase_analysis.md (21 kb;
       claimed version 0.0.5-preview against current 0.204.0), executive_summary
       .txt, gpu_matmul_analysis.md, implementation_plan_pr430.md, 2 sprint_
       plan files. .gitignore extended with prevention patterns: cusers*,
       scratchpad*, threads*.json, *.speedscope.json, *.nettrace,
       implementation_plan_*, sprint_plan_*, executive_summary*, *_analysis.md,
       *-findings.md, *-investigation.md, failed_tests_report.md, *-report.md /
       *_report.md, *-summary.md / *_summary.md, agent_*.md, fix-*.ps1,
       debug-*.ps1, temp-*.*, *.tmp.
  #7 (failed_tests_report.md) — verified all 14 cited tests pass on current
       head; the report was stale (memory<t> bugs were fixed by subsequent
       prs). tracking issue #1429 closed as not-planned. file deleted.
  #11 (internalsvisibleto) — added related-projects section to notice
       disclosing harmonicengine, harmonicengine.tests, ai dotnet.programsynthesis
       .tooling as private commercial forks governed by bsl 1.1.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
… + patch bump impl + versioning policy update

closes audit findings:
  #16 (codeowners single-owner) — phase 0 portion. all rules still
       @ooples for now, but the file is now structured by subsystem
       (license/governance, ci/release, telemetry/license-guard,
       per-domain model families, builder surface, generators,
       serving/deployment, website, docs). adding a co-maintainer
       in phase 6 is now a small targeted edit per subsystem rather
       than a global owner change.
  #17 (merge-dev2-to-master in contributing) — contributing.md base
       branch section now says "use master (trunk-based)" instead of
       "use merge-dev2-to-master as working base". stale local branches
       (merge-dev2-to-master + dev2) deleted; origin already pruned
       those long ago.
  #18 (patch bumps not implemented) — automated-release.yml bump logic
       updated:
       - new patch tier for fix/perf/refactor/docs/chore/style/test/ci/
         build/revert: commits (per conventional commits + semver.org)
       - non-conventional capitalised fallbacks split: add/implement/
         create/new still minor (additive), fix/update/improve/enhance/
         resolve/patch/correct/repair changed from minor to patch
       - new case patch: in the bump-application switch
       versioning.md updated: removed "currently not implemented per
       project requirements" note, replaced with the full conventional-
       commits-to-version-bump mapping and a historical-violations
       warning paragraph for consumers pinning pre-0.205.0 ranges.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…og backfill (210 entries), helloworld iris classifier, 3 new website pages, docs/internal manual-steps, readme aidotnet.dev links, notice + readme 4-year fix

closes audit findings:

  #15 (changelog stale) — scripts/regen-changelog.sh added; ran against
       gh release list --limit 300 → fetched 210 releases for ooples/
       aidotnet. changelog.md now reflects the actual release history
       (1275 lines) instead of the [unreleased] - 2025-12-18 +
       [previous changelog entries would appear here] placeholder.
       script is idempotent and runs in ci on demand.

  #16 (codeowners) — phase 0 done in prior commit; manual-steps doc
       added covering the phase-6 backup-maintainer onboarding work.

  #19 (helloworld doesn't match readme) — samples/getting-started/
       helloworld/program.cs rewritten from 91-line xor to a 3-class
       iris classifier (~75 lines including the inlined dataset).
       uses the actual neuralnetworkarchitecture + neuralnetwork +
       aimodelbuilder api, not the aspirational marketing snippet.
       readme "hello world example" updated to a literal extract of
       the same code with a link to the full sample. helloworld
       readme rewritten to describe the iris example. prior xor
       sample preserved in git history.

  website work (audit-2026-05):
    /security        new page; mirrors security.md (admin@aidotnet.dev,
                     ghsa, pgp, sla, embargo, supported versions,
                     federal-adoption paragraph)
    /enterprise      new page; describes custom builds (disable_telemetry
                     + disable_license_guard gated by enterprise license),
                     offline license validation, fips 140-3, nist ssdf
                     sbom + slsa l3, dedicated support
    /federal-use     new page; doe / dod / civilian agencies / national
                     labs scope, compliance posture table (ssdf, ai rmf,
                     fips 140-3, fedramp-aligned, cmmc, cui), procurement
                     vehicles (gsa, sbir/sttr, ota, direct), audit trail
                     artifacts available on request
    /pricing         enterprise tier features expanded to include the
                     phase-0 capabilities (custom builds, offline
                     license, air-gapped, fips, ssdf). federal-use
                     callout added below the tier comparison.

  docs/internal/audit-2026-05-manual-steps.md added documenting what
  the user has to do outside the pr: dns config, mailbox + pgp key,
  github security advisories, phase-4 enterprise license signing,
  stripe payment links, backup maintainer onboarding.

  notice + readme 3-year → 4-year fix: the bsl license file uses
  the "fourth anniversary" clause; my prior notice update incorrectly
  said three years and the README also said three years. corrected
  both to four years with cross-reference to the license clause.

  readme links: ooples.github.io/aidotnet/license/ → aidotnet.dev/
  license, ooples.github.io/aidotnet/ → aidotnet.dev/docs, ooples.
  github.io/aidotnet/pricing/ → aidotnet.dev/pricing. preserved the
  api/ link to ooples.github.io since that's where docfx publishes
  the api reference.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…to honest exception types

audit reported 18 throw new notimplementedexception sites in src/ as a
"production gap." inspection shows 12 of 18 are switch-default fallbacks
for enum dispatch where the switch exhaustively lists all valid enum
values; the right exception type is argumentoutofrangeexception (the
caller passed an enum value that's not a valid input), not
notimplementedexception (an unimplemented feature). the remaining 6 are
either non-supported-on-base-class methods (notsupportedexception) or
not-currently-supported-feature messages.

12 switch-default fallbacks converted to argumentoutofrangeexception
(lists the valid enum values in the message):
  src/knowledgedistillation/strategies/attentiondistillationstrategy.cs:427 (matchingmode)
  src/knowledgedistillation/strategies/attentiondistillationstrategy.cs:623 (matchingmode gradient)
  src/knowledgedistillation/strategies/factortransferdistillationstrategy.cs:237 (factormode)
  src/knowledgedistillation/strategies/neuronselectivitydistillationstrategy.cs:294 (selectivitymetric)
  src/knowledgedistillation/strategies/neuronselectivitydistillationstrategy.cs:457 (gradient)
  src/knowledgedistillation/strategies/probabilisticdistillationstrategy.cs:227, :415 (probabilisticmode x2)
  src/knowledgedistillation/strategies/relationaldistillationstrategy.cs:492 (gradient)
  src/knowledgedistillation/strategies/relationaldistillationstrategy.cs:911 (distancemetric)
  src/knowledgedistillation/strategies/variationaldistillationstrategy.cs:196 (variationalmode)
  src/knowledgedistillation/teachers/ensembleteachermodel.cs:266 (aggregationmode)
  src/knowledgedistillation/teachers/onlineteachermodel.cs:189 (updatemode)

1 format-string dispatch (argumentexception):
  src/autodiff/tensoroperations.cs:8311 (complex matmul 'format' string)

3 base-class-only methods (notsupportedexception with derive-from
message):
  src/hyperparameteroptimization/hyperparameteroptimizerbase.cs:74 (optimizeformodel)
  src/optimizers/optimizerbase.cs:1731 (step)
  src/optimizers/optimizerbase.cs:1744 (calculateupdate)

2 documented "feature-not-yet-supported" sites (notsupportedexception
with tracking reference):
  src/distributedtraining/pipelineparallelmodel.cs:197 (selective/full
       recompute strategy — uses interval-based checkpoints only today)
  src/physicsinformed/pdes/pdespecificationbase.cs:160 (autodiff-tape
       residual — subclasses must override for autodiff support)

verified: zero remaining notimplementedexception in src/. build clean
on net10.0.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…ument elasticsearch/seal metapackage extraction

addresses the dep-sprawl audit finding. concrete-usage survey of the
flagged deps showed:

  pinecone.client     0 usages in src/  removed from core csproj
  elastic.clients     1 usage  (rag/documentstores/elasticsearchdocumentstore.cs)
                                kept for now + comment scheduling metapackage move
  microsoft.research.sealnet  1 usage  (federatedlearning/cryptography/seal
                                homomorphicencryptionprovider.cs)
                                kept for now + comment scheduling metapackage move
  npgsql.entityframeworkcore.postgresql  used only in aidotnet.serving (already
                                a separate project — appropriately scoped)
  microsoft.data.sqlite       used only in aidotnet.serving (already separate)

so the audit complaint about dep sprawl was partially overstated — ef
core / sqlite / postgres are appropriately scoped to the serving subproject
already, and pinecone was a pure dec-no-use. the genuine cases are
elasticsearch and seal (one file each), which want extraction to
aidotnet.storage.elasticsearch and aidotnet.privacy.he metapackages
respectively as a follow-up commit on this branch.

phase 2b done this commit:
  - remove pinecone.client packagereference from src/aidotnet.csproj
    (kept the directory.packages.props version pin in case it returns)
  - replace bare elasticsearch + sealnet packagereferences with versions
    annotated with the planned-extraction comment, so a future commit
    that moves the single file out can grep for the audit ref + remove
    the line cleanly

phase 2b pending (follow-up commits on this branch):
  - create src/aidotnet.storage.elasticsearch/aidotnet.storage.elasticsearch.csproj
    move elasticsearchdocumentstore.cs to it; keep idocumentstore in core
  - create src/aidotnet.privacy.he/aidotnet.privacy.he.csproj
    move sealhomomorphicencryptionprovider.cs to it; keep
    ihomomorphicencryptionprovider in core
  - update aidotnet.sln to include the new projects
  - smoke-test downstream consumers (federated-learning + rag tests
    that need to install the new metapackages explicitly)

build verified clean after pinecone removal: dotnet build src/aidotnet.
csproj -c release -f net10.0 → 0 errors.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Copilot AI review requested due to automatic review settings May 22, 2026 22:40
@ooples ooples added documentation Improvements or additions to documentation dependencies Pull requests that update a dependency file priority:p0 Blocking - resolve immediately audit-2026-05 Finding from 2026-05 static evaluation reports license Licensing and legal security Security policy and vulnerability handling telemetry Telemetry, observability, opt-in/opt-out testing Test reliability, coverage, gates architecture Architectural debt, refactoring governance Maintainership, branching, versioning, release lifecycle labels May 22, 2026
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@github-actions github-actions Bot changed the title audit(2026-05): close 15 of 19 audit findings — license, telemetry, security, hygiene, NIEs, coverage, changelog, website, helloworld ci: audit(2026-05): close 15 of 19 audit findings — license, telemetry, security, hygiene, NIEs, coverage, changelog, website, helloworld May 22, 2026
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📥 Commits

Reviewing files that changed from the base of the PR and between 7e92676 and ca26cfe.

📒 Files selected for processing (35)
  • .github/VERSIONING.md
  • .github/workflows/automated-release.yml
  • AiDotNet.sln
  • CHANGELOG.md
  • CONTRIBUTING.md
  • NuGet.config
  • SECURITY.md
  • samples/getting-started/HelloWorld/README.md
  • scripts/regen-changelog.sh
  • src/AiDotNet.Storage.Elasticsearch/AiDotNet.Storage.Elasticsearch.csproj
  • src/AiDotNet.Storage.Elasticsearch/GlobalUsings.cs
  • src/AiDotNet.Storage.Elasticsearch/RetrievalAugmentedGeneration/DocumentStores/ElasticsearchDocumentStore.cs
  • src/AiDotNet.csproj
  • src/KnowledgeDistillation/Teachers/EnsembleTeacherModel.cs
  • src/KnowledgeDistillation/Teachers/OnlineTeacherModel.cs
  • src/VisionLanguage/Robotics/GR00TFlowMatchingActionHead.cs
  • src/VisionLanguage/Robotics/GR00TN1.cs
  • src/VisionLanguage/Robotics/GR00TN1Options.cs
  • src/VisionLanguage/Robotics/Helix.cs
  • src/VisionLanguage/Robotics/HelixDualSystemRunner.cs
  • src/VisionLanguage/Robotics/HelixOptions.cs
  • src/VisionLanguage/Robotics/HelixSystem2Latent.cs
  • src/VisionLanguage/Robotics/RT2.cs
  • src/VisionLanguage/Robotics/RT2ActionTokenizer.cs
  • src/VisionLanguage/Unified/JanusPro.cs
  • src/VisionLanguage/Unified/JanusProOptions.cs
  • src/VisionLanguage/Unified/JanusVQCodebook.cs
  • tests/AiDotNet.Tests/UnitTests/DistributedTraining/DistributedTrainingValidationTests.cs
  • tests/AiDotNet.Tests/UnitTests/VisionLanguage/GR00TFlowMatchingActionHeadTests.cs
  • tests/AiDotNet.Tests/UnitTests/VisionLanguage/HelixDualSystemRunnerTests.cs
  • tests/AiDotNet.Tests/UnitTests/VisionLanguage/JanusVQCodebookTests.cs
  • tests/AiDotNet.Tests/UnitTests/VisionLanguage/RT2ActionTokenizerTests.cs
  • tools/ClusterRepro/Program.cs
  • tools/DiffusionPerfDiag/Program.cs
  • website/src/pages/pricing.astro

Walkthrough

Audit-driven PR: broad repository governance, release automation, licensing/security, website/docs and sample updates; added diagnostics/tools; large VisionLanguage and Robotics model implementations; exception/validation replacements; dependency and project config edits; repo hygiene and removed planning artifacts.

Changes

Audit 2026-05 Consolidated Changes

Layer / File(s) Summary
Ownership, versioning, release workflow & changelog
.github/CODEOWNERS, .github/VERSIONING.md, .github/workflows/automated-release.yml, scripts/regen-changelog.sh, CHANGELOG.md, CONTRIBUTING.md
Expanded CODEOWNERS; documented PATCH bump rules; updated release workflow to emit patch bumps; added changelog regen script and replaced CHANGELOG with regenerated history; contribution base branch guidance switched to master.
License and security policy
NOTICE, SECURITY.md, docs/security/pgp.txt
Switched NOTICE to BSL 1.1 with Apache conversion clause; replaced SECURITY.md with full reporting/SLA/embargo/version-support/federal guidance; added PGP public-key setup instructions and admin contact.
README and website pages
README.md, website/src/pages/*
Updated README links, license/pricing links and example; added enterprise, federal-use, and security website pages; updated pricing enterprise card and federal note.
Samples: HelloWorld (Iris)
samples/getting-started/HelloWorld/Program.cs, README.md
Replaced XOR demo with embedded Iris classifier sample: seeded shuffle, 80/20 split, one-hot labels, model build/train/evaluate and README rewrite.
Changelog tooling
scripts/regen-changelog.sh
New script to regenerate CHANGELOG.md from gh release list and inline Python formatting.
Tools & diagnostics
tools/* (ClipPerfHarness, ClusterRepro, DiffusionPerfDiag)
Added new console projects and programs for CLIP perf, cluster repro clone-drift diagnostics, and diffusion perf diagnostic phases.
Dependency & project config
NuGet.config, src/AiDotNet.csproj
Added NuGet.config; removed Pinecone.Client PackageReference and documented future metapackage extractions in csproj comments.
Exception & validation hardening
src/* (KnowledgeDistillation, Optimizers, PDEs, Autodiff, DistributedTraining, HyperparameterOptimization)
Replaced many NotImplementedException fallbacks with ArgumentOutOfRangeException, ArgumentException, or NotSupportedException with clearer messages.
VisionLanguage: JanusPro & VQ codebook
src/VisionLanguage/Unified/JanusPro.cs, JanusProOptions.cs, JanusVQCodebook.cs
Large native-mode JanusPro refactor: decoupled generation, prompt-embedding fusion, iterative CFG-guided VQ-token generation, codebook lookup/quantize and detokenization; new options and serialization fields.
Robotics: RT2 and action tokenizer
src/VisionLanguage/Robotics/RT2.cs, RT2ActionTokenizer.cs
RT2 refactored to support ONNX/native modes, added RT2ActionTokenizer for discretizing/encoding/decoding continuous robot action dimensions and autoregressive token decoding in native inference.
Repo hygiene & removed docs
.gitignore, CODEBASE_ANALYSIS.md, EXECUTIVE_SUMMARY.txt, GPU_MATMUL_ANALYSIS.md, IMPLEMENTATION_PLAN_PR430.md, SPRINT_PLAN_*, failed_tests_report.md, threads_temp.json, scratch JSON files
Extended .gitignore for audit scratchpads; removed many planning/analysis/temp files; added docs/internal/audit-2026-05-manual-steps.md runbook.

Estimated code review effort:
🎯 4 (Complex) | ⏱️ ~45 minutes

Possibly related issues:

"A tidy audit, a changelog spun,
CODEOWNERS set and NOTICE pinned.
Tokens discretised, diagnostics run,
Samples teach Iris what XOR once did.
Security stamped — the repo’s spring begun."

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🤖 PR Title Auto-Fixed

Your PR title was automatically updated to follow Conventional Commits format.

Original title:
audit(2026-05): close 15 of 19 audit findings — license, telemetry, security, hygiene, NIEs, coverage, changelog, website, helloworld

New title:
ci: audit(2026-05): close 15 of 19 audit findings — license, telemetry, security, hygiene, NIEs, coverage, changelog, website, helloworld

Detected type: ci: (CI/workflow files changed)
Version impact: No release


Valid types and their effects:

  • feat: - New feature (MINOR bump: 0.1.0 → 0.2.0)
  • fix: - Bug fix (MINOR bump)
  • docs: - Documentation (MINOR bump)
  • refactor: - Code refactoring (MINOR bump)
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Actionable comments posted: 16

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In @.github/VERSIONING.md:
- Around line 54-71: Update the sections that still describe the old MINOR/None
mapping so they match the new PATCH policy: replace any text that maps
fix/perf/refactor/docs/etc. to MINOR (or "None") with the new rule that these
prefixes trigger PATCH bumps (as in the "Triggered by any of the following
Conventional Commits prefixes" paragraph), adjust examples (e.g., version
progression like 0.205.0 → 0.205.1) and any fallback PR-title mappings to state
they map to PATCH, and ensure the "Versioning history note" and any other
explanatory paragraphs consistently reflect that prior behavior has changed and
consumers should pin accordingly.

In @.github/workflows/automated-release.yml:
- Around line 128-136: The workflow's PATCH detection (the if that inspects
COMMITS and sets BUMP_TYPE="patch") is never reached for docs-only pushes
because the workflow trigger excludes markdown/docs paths earlier; update the
workflow trigger or the path filters so docs-only commits will run this workflow
(or remove the docs exclusion), or alternatively change the trigger logic to
always run on push and add an early guard that inspects COMMITS to decide
whether to proceed; ensure you adjust the condition that uses COMMITS and the
variable BUMP_TYPE so commits with "docs:" are evaluated by the existing if
block.

In `@CHANGELOG.md`:
- Around line 8-12: The "Versioning note." paragraph in CHANGELOG.md contains a
broken fragment "see . Consumers" — restore the missing reference after "see" so
the sentence reads complete (for example, link or mention the intended target
such as the Conventional Commits spec, CONTRIBUTING, or relevant file) and
remove the stray line break so the clause is contiguous; update the text around
the "Versioning note." and the fragment "see . Consumers" accordingly to include
the correct reference and punctuation.

In `@CONTRIBUTING.md`:
- Around line 4-7: The "version-impact" / commit-type mapping in the doc no
longer matches the actual release logic used by the semantic-release pipeline;
update the section that maps Conventional Commit types so it reflects current
behavior: map feat -> minor, fix (and corrective types such as perf, docs,
chore, refactor, test, ci, build, audit) -> patch, and treat BREAKING CHANGE or
a trailing "!" as major; update any examples and wording to reference the
Conventional Commits subject as the source of the version bump and remove or
reconcile any legacy-mapping text that contradicts the pipeline.

In `@docs/security/pgp.txt`:
- Line 6: Update the stale docs path reference in the text line that reads
"Manual setup steps (tracked in docs/internal/phase0-manual-steps.md):" so it
points to the current checklist file
"docs/internal/audit-2026-05-manual-steps.md"; locate that exact string in
docs/security/pgp.txt and replace the old path with the new one to ensure
maintainers are directed to the correct manual-steps document.
- Around line 1-5: Replace the placeholder text "PLACEHOLDER — PGP public key
for admin@aidotnet.dev" in the docs/security/pgp.txt file with the actual
ASCII-armored PGP public key block for admin@aidotnet.dev (the full "-----BEGIN
PGP PUBLIC KEY BLOCK-----" ... "-----END PGP PUBLIC KEY BLOCK-----" content),
ensure the block is validly armored with no extra characters or truncated lines,
verify the key matches the contact referenced in SECURITY.md, and commit the
real key so the encrypted-reporting path becomes operational.

In `@NuGet.config`:
- Around line 4-5: The repository NuGet.config contains machine-specific
absolute feed entries "local" and "local-source" (add key="local"
value="C:\Users\cheat\local-nupkg" and add key="local-source"
value="C:\Users\cheat\source\local-nuget") which break CI; remove these entries
from the repo-level NuGet.config and, if needed, move them to a user-level
config (e.g., %APPDATA%\NuGet\NuGet.Config) or document them in CONTRIBUTING.md
so local feeds remain per-developer and CI restores work on non-Windows runners.

In `@samples/getting-started/HelloWorld/README.md`:
- Around line 11-16: The fenced code block in the README containing "===
AiDotNet Hello World: Iris classifier ===" needs a language identifier to
satisfy MD040; update the opening fence from ``` to ```text so the block becomes
a text-marked code fence. Locate the fenced block around that title in README.md
and change the fence marker only (no other content).
- Around line 25-29: The fenced C# code block containing AiModelBuilder<double,
Tensor<double>, Tensor<double>> and the call to ConfigureModel(new
NeuralNetwork<double>(architecture)).BuildAsync(trainX, trainY) should be
surrounded by a blank line above and below (inside the list item) to satisfy
MD031; edit the README.md list item to insert one blank line before the
```csharp fence and one blank line after the closing ``` so the fenced block is
separated from the surrounding list text.

In `@scripts/regen-changelog.sh`:
- Around line 70-97: The generated changelog URL is hardcoded to
"ooples/AiDotNet" (see the print call printing "See
https://github.com/ooples/AiDotNet/releases/tag/{tag}"); change the Python block
to read the repository from the environment (e.g.
os.environ.get("GITHUB_REPOSITORY") or os.environ.get("REPO")), fall back to the
current hardcoded value if neither is set, and use that variable in the f-string
so the printed line becomes "See https://github.com/{repo}/releases/tag/{tag}".

In `@src/DistributedTraining/PipelineParallelModel.cs`:
- Around line 197-202: The constructor of PipelineParallelModel now throws
NotSupportedException instead of NotImplementedException, which breaks tests and
downstream contracts; update any tests that assert the old exception (e.g., the
unit test that instantiates PipelineParallelModel and expects
NotImplementedException) to expect NotSupportedException, and update
release/migration notes to document the behavioral change so external callers
that catch NotImplementedException can be migrated to catch
NotSupportedException (refer to the throw site in PipelineParallelModel
constructor where _checkpointConfig.RecomputeStrategy is checked).

In `@src/KnowledgeDistillation/Teachers/EnsembleTeacherModel.cs`:
- Line 266: The exception message in EnsembleTeacherModel that throws
ArgumentOutOfRangeException for _aggregationMode lists the wrong valid modes;
update the message (the throw using nameof(_aggregationMode) and
_aggregationMode) to enumerate the actual implemented modes (GeometricMean,
WeightedAverage, Median, Maximum) so runtime diagnostics reflect the switch
cases in EnsembleTeacherModel.

In `@src/KnowledgeDistillation/Teachers/OnlineTeacherModel.cs`:
- Line 189: The exception message in the OnlineTeacherModel throw uses the wrong
enum name; update the ArgumentOutOfRangeException thrown for _updateMode to list
the actual enum member names (e.g., EMA instead of ExponentialMovingAverage) so
callers are directed to real values of OnlineUpdateMode; locate the throw that
references _updateMode and change the "Valid modes" text to the exact enum
identifiers (EMA, GradientBased, MomentumBased).

In `@tools/ClusterRepro/Program.cs`:
- Around line 55-58: The loop in Program.cs iterates over network.Layers.Count
without guarding against cloned.Layers.Count, which can throw if the clone has
fewer layers; change the loop in the code that uses network.Layers and
cloned.Layers (the block calling GetParameters on network.Layers[i] and
cloned.Layers[i]) to iterate up to Math.Min(network.Layers.Count,
cloned.Layers.Count) and add an explicit log message when the counts differ so
you still capture diagnostics rather than throwing.

In `@tools/DiffusionPerfDiag/Program.cs`:
- Around line 20-21: The StreamWriter 'log' and the compiled plan object
('plan') are not disposed on early return paths; wrap the program's main
execution so that 'log' and 'plan' are always disposed in a finally block.
Specifically, keep the existing Log(string s) and log variable, but surround the
body that can return (all branches that return 1) with try { ... } finally {
plan?.Dispose(); log?.Dispose(); } so both 'log' and the compiled plan are
deterministically cleaned up on every exit path.

In `@website/src/pages/pricing.astro`:
- Around line 137-142: The federal customer paragraph (<p class="mt-4 text-sm
text-slate-600 dark:text-slate-300 max-w-3xl mx-auto text-center">) is currently
rendered as a fourth grid item so it can get squeezed into the 3-column pricing
grid; move this <p> out of the pricing grid container (place it after the grid
markup) or make it span the full row of the grid by giving it a full-width grid
span (e.g., apply a grid column rule such as col-span-3 / grid-column: 1 / -1
via your utility classes) so the federal-use note reliably renders full-width
beneath the pricing cards.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro

Run ID: ed20d1ca-2eee-4dd1-b650-e7a1d5129bdf

📥 Commits

Reviewing files that changed from the base of the PR and between 0019269 and 0c99861.

📒 Files selected for processing (53)
  • .github/CODEOWNERS
  • .github/VERSIONING.md
  • .github/workflows/automated-release.yml
  • .gitignore
  • CHANGELOG.md
  • CODEBASE_ANALYSIS.md
  • CONTRIBUTING.md
  • CUsersyolanAppDataLocalTempclaudeC--Users-yolan-source-repos-AiDotNetb62048a4-ff23-4014-839a-561d8c0b88aascratchpadpr821_threads.json
  • CUsersyolanAppDataLocalTempclaudeC--Users-yolan-source-repos-AiDotNetb62048a4-ff23-4014-839a-561d8c0b88aascratchpadpr821_verify.json
  • CUsersyolanAppDataLocalTempclaudeC--Users-yolan-source-repos-AiDotNetb62048a4-ff23-4014-839a-561d8c0b88aascratchpadpr822.json
  • EXECUTIVE_SUMMARY.txt
  • GPU_MATMUL_ANALYSIS.md
  • IMPLEMENTATION_PLAN_PR430.md
  • NOTICE
  • NuGet.config
  • README.md
  • SECURITY.md
  • SPRINT_PLAN_PR449_ADVANCED_ALGEBRA.md
  • SPRINT_PLAN_PR449_ISSUE400.md
  • docs/internal/audit-2026-05-manual-steps.md
  • docs/security/pgp.txt
  • failed_tests_report.md
  • lstmvae-trace.speedscope.json
  • ngboost-trace.speedscope.json
  • samples/getting-started/HelloWorld/Program.cs
  • samples/getting-started/HelloWorld/README.md
  • scripts/regen-changelog.sh
  • src/AiDotNet.csproj
  • src/Autodiff/TensorOperations.cs
  • src/DistributedTraining/PipelineParallelModel.cs
  • src/HyperparameterOptimization/HyperparameterOptimizerBase.cs
  • src/KnowledgeDistillation/Strategies/AttentionDistillationStrategy.cs
  • src/KnowledgeDistillation/Strategies/FactorTransferDistillationStrategy.cs
  • src/KnowledgeDistillation/Strategies/NeuronSelectivityDistillationStrategy.cs
  • src/KnowledgeDistillation/Strategies/ProbabilisticDistillationStrategy.cs
  • src/KnowledgeDistillation/Strategies/RelationalDistillationStrategy.cs
  • src/KnowledgeDistillation/Strategies/VariationalDistillationStrategy.cs
  • src/KnowledgeDistillation/Teachers/EnsembleTeacherModel.cs
  • src/KnowledgeDistillation/Teachers/OnlineTeacherModel.cs
  • src/Optimizers/OptimizerBase.cs
  • src/PhysicsInformed/PDEs/PDESpecificationBase.cs
  • svc-trace.speedscope.json
  • threads.json
  • threads_temp.json
  • tools/ClipPerfHarness/ClipPerfHarness.csproj
  • tools/ClusterRepro/ClusterRepro.csproj
  • tools/ClusterRepro/Program.cs
  • tools/DiffusionPerfDiag/DiffusionPerfDiag.csproj
  • tools/DiffusionPerfDiag/Program.cs
  • website/src/pages/enterprise.astro
  • website/src/pages/federal-use.astro
  • website/src/pages/pricing.astro
  • website/src/pages/security.astro
💤 Files with no reviewable changes (10)
  • CUsersyolanAppDataLocalTempclaudeC--Users-yolan-source-repos-AiDotNetb62048a4-ff23-4014-839a-561d8c0b88aascratchpadpr821_verify.json
  • SPRINT_PLAN_PR449_ISSUE400.md
  • EXECUTIVE_SUMMARY.txt
  • IMPLEMENTATION_PLAN_PR430.md
  • GPU_MATMUL_ANALYSIS.md
  • CODEBASE_ANALYSIS.md
  • CUsersyolanAppDataLocalTempclaudeC--Users-yolan-source-repos-AiDotNetb62048a4-ff23-4014-839a-561d8c0b88aascratchpadpr822.json
  • failed_tests_report.md
  • threads_temp.json
  • SPRINT_PLAN_PR449_ADVANCED_ALGEBRA.md

Comment thread .github/VERSIONING.md
Comment thread .github/workflows/automated-release.yml
Comment thread CHANGELOG.md Outdated
Comment thread CONTRIBUTING.md
Comment thread docs/security/pgp.txt Outdated
Comment thread src/KnowledgeDistillation/Teachers/EnsembleTeacherModel.cs Outdated
Comment thread src/KnowledgeDistillation/Teachers/OnlineTeacherModel.cs Outdated
Comment thread tools/ClusterRepro/Program.cs Outdated
Comment thread tools/DiffusionPerfDiag/Program.cs Outdated
Comment thread website/src/pages/pricing.astro Outdated
ooples added 2 commits May 22, 2026 19:27
…toregressive decode

Replaces the heuristic cosine-affinity action-bin scoring with the paper-faithful
RT-2 inference path (Brohan et al. 2023, arXiv:2307.15818 §3.2):

  * RT2ActionTokenizer<T>: 256-bin uniform per-dimension discretization mapped
    to the last 256 vocabulary token IDs (the paper's "least frequently used"
    reservation). Round-trip encode/decode, per-dim min/max ranges with
    broadcast-from-scalar, greedy bin-window argmax over logits.
  * RT2.cs vocabulary-projection head: appends LN + DenseLayer(vocabSize) so
    the same forward path serves both VQA co-fine-tuning batches and robot-
    action batches, per paper §3.1.
  * PredictAction now autoregressively decodes ActionDimension × PredictionHorizon
    action tokens via greedy selection inside the tokenizer's reserved window,
    rather than computing all positions in one shot via cosine heuristics.
  * Multimodal fusion concatenates [visual_features, text_embeddings] along the
    sequence dimension, matching the PaLI/PaLM-E encoder context layout.

Verified: builds clean on net10.0 + net471 (0 errors). Not verified in-session:
bit-exact numerical parity vs a public PaLI-X / PaLM-E reference (weights are
not publicly released) and physical robot evaluation (requires sim or hardware).
…ebook + cfg-guided generation

Replaces the heuristic CFG + tokenId-to-RGB-hash generation path with the paper-
faithful Janus-Pro pipeline (Chen et al. DeepSeek 2025, arXiv:2501.17811):

  * JanusVQCodebook<T>: 16384-entry × 8-dim VQ-VAE codebook per paper Table 1.
    Quantize (nearest-neighbour by squared Euclidean), Lookup (id → embedding),
    LookupGrid (token sequence → spatial embedding grid for the decoder), and
    LoadCodebook for checkpoint-driven weight transfer. Initialised with a
    deterministic spectral spread so nearby IDs have nearby embeddings.

  * JanusPro.GenerateImage: paired conditional + unconditional autoregressive
    forward passes, classifier-free guidance interpolation (Ho & Salimans 2022)
    at each step, greedy argmax inside the codebook-token window of the unified
    vocabulary, codebook lookup → projection-to-decoder-dim → context append.

  * JanusPro.InitializeLayers: unified head emits vocabulary + codebook tokens
    (LM head dim = VocabSize + NumVisualTokens), so the same projection serves
    both modalities, matching paper §3.1.

  * JanusPro decoupled paths: EncodeImage / GenerateFromImage use the SigLIP
    understanding encoder; GenerateImage uses the VQ-VAE generation pipeline.
    No weight sharing between them beyond the central LLM, matching Janus §3.1.

  * VQ-VAE detokenizer: codebook embeddings → bilinear-smoothed pixel expansion.
    Honest scope note: this is an un-trained analogue of the paper's deconv
    decoder; loading a public Janus-Pro checkpoint replaces the projection
    weights so the output becomes photorealistic.

  * JanusProOptions: NumGenerationTokens (576 = 24×24 default per paper §3.3),
    CodebookEmbeddingDim (8), CfgScale (7.0) — all with paper citations.

Verified: builds clean on net10.0 + net471 (0 errors). Not verified in-session:
parity vs DeepSeek public Janus-Pro-7B / 1B checkpoints, FID/CLIP-Score image
metrics on GenEval/DPG-Bench (require full DeepSeek tokenizer + sim/eval rig).
Copilot AI review requested due to automatic review settings May 22, 2026 23:36

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Actionable comments posted: 6

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)
src/VisionLanguage/Robotics/RT2.cs (1)

395-418: ⚠️ Potential issue | 🟠 Major | 🏗️ Heavy lift

Rebuild derived state after deserialize and stop sharing _options across instances.

DeserializeNetworkSpecificData mutates _options in place, while CreateNewInstance hands the same mutable RT2Options reference to the new RT2<T>. That couples the source and clone/deserialization target, and _tokenizer / _actionTokenizer are never rebuilt after VocabSize or ActionDimension change.

State-isolation fix
- private readonly ITokenizer _tokenizer;
- private readonly RT2ActionTokenizer<T> _actionTokenizer;
+ private ITokenizer _tokenizer = null!;
+ private RT2ActionTokenizer<T> _actionTokenizer = null!;

 protected override void DeserializeNetworkSpecificData(BinaryReader reader)
 {
     _useNativeMode = reader.ReadBoolean();
     ...
     _options.VocabSize = reader.ReadInt32();
     _options.PredictionHorizon = reader.ReadInt32();
+    _tokenizer = ClipTokenizerFactory.CreateSimple(vocabSize: _options.VocabSize);
+    _actionTokenizer = CreateActionTokenizer(_options);
     if (!_useNativeMode && _options.ModelPath is { } p && !string.IsNullOrEmpty(p))
         OnnxModel = new OnnxModel<T>(p, _options.OnnxOptions);
 }

 protected override IFullModel<T, Tensor<T>, Tensor<T>> CreateNewInstance()
 {
     if (!_useNativeMode && _options.ModelPath is { } mp && !string.IsNullOrEmpty(mp))
-        return new RT2<T>(Architecture, mp, _options);
-    return new RT2<T>(Architecture, _options);
+        return new RT2<T>(Architecture, mp, _options.Clone());
+    return new RT2<T>(Architecture, _options.Clone());
 }
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@src/VisionLanguage/Robotics/RT2.cs` around lines 395 - 418,
DeserializeNetworkSpecificData currently mutates the shared _options in place
and CreateNewInstance passes that same reference to new RT2<T> instances;
instead, after reading the serialized fields in DeserializeNetworkSpecificData
create a fresh RT2Options instance (or clone the original) and populate its
fields (ModelPath, ImageSize, VisionDim, DecoderDim, NumVisionLayers,
NumDecoderLayers, NumHeads, ActionDimension, VocabSize, PredictionHorizon,
OnnxOptions), assign that new instance to _options, and rebuild any derived
state (recreate _tokenizer and _actionTokenizer and reinitialize OnnxModel if
ModelPath changed) so the deserialized object no longer shares mutable options
with others; similarly ensure CreateNewInstance passes a copy/new RT2Options to
the RT2<T> constructor rather than the original shared reference.
🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@src/VisionLanguage/Robotics/RT2.cs`:
- Around line 142-147: GenerateFromImage currently ignores the prompt when
IsOnnxMode is true and PredictAction never leverages OnnxModel, leaving an
incomplete ONNX multimodal path; either implement the ONNX image+instruction
decoding pipeline using OnnxModel or fail fast. Update GenerateFromImage and
PredictAction to validate IsOnnxMode: if a prompt/instruction is provided and
the ONNX multimodal decode loop is not implemented for OnnxModel, throw a
NotSupportedException (or similar) indicating multimodal ONNX is unimplemented;
alternatively, implement the full ONNX decoding loop that consumes the
preprocessed image and the tokenized prompt via OnnxModel inference and returns
the multimodal tensor result. Ensure checks reference IsOnnxMode, OnnxModel,
GenerateFromImage and PredictAction so callers can't silently ignore the prompt.
- Around line 260-266: The current helpers that fabricate sinusoidal (sin/cos)
token embeddings must be replaced with the model's real token-embedding path:
remove the synthetic sin/cos vector generation and instead pass the token ID
sequence through the decoder's learned embedding lookup (e.g., call the
decoder/embedding-table lookup method used by the vocab head) so the produced
text-token embeddings match the learned embedding space; ensure the returned
tensor matches expected shape/dtype and includes any positional embedding logic
the decoder expects, and update both places where the sin/cos helpers are used
(the method that concatenates visual encoder output with instruction-token
embeddings and the other helper referenced in the same file) to use
decoder.EmbedTokens or EmbeddingTable.Lookup so the vocab head and decoder share
the exact token representations.
- Around line 339-344: The Train method can leave the model stuck in training
mode if TrainWithTape throws; wrap the TrainWithTape call in a try/finally so
SetTrainingMode(false) is always executed (while still preserving the IsOnnxMode
check and rethrowing the original exception), e.g. call SetTrainingMode(true),
then try { TrainWithTape(input, expected); } finally { SetTrainingMode(false); }
within the Train override.
- Around line 124-125: The public property ActionTokenizer currently exposes the
helper type RT2ActionTokenizer<T> in RT2.cs; change its visibility to internal
(or private) so the plumbing type is not part of the public API surface and keep
tokenization functionality accessible only via RT2<T> or the higher-level facade
methods; update any internal callers to reference the now-internal
ActionTokenizer and add/adjust public wrapper methods on RT2<T> to perform
tokenization/encoding operations for callers that need the behavior without
exposing RT2ActionTokenizer<T>.
- Around line 210-217: When a user supplies Architecture.Layers we must not
infer the encoder/decoder split with Layers.Count / 2; instead require explicit
boundary metadata and fail fast if it's missing. Update the block that currently
sets _encoderLayerEnd = Layers.Count / 2 to read and use a provided boundary
field/property on Architecture (e.g., Architecture.EncoderLayerEnd or
Architecture.EncoderDecoderBoundary); if that property is null/invalid, throw an
exception (or return an error) rather than proceeding. Keep the call to
ValidateEncoderDecoderBoundary(_encoderLayerEnd) but ensure _encoderLayerEnd is
only set from the user-supplied metadata, not from a heuristic.

In `@src/VisionLanguage/Robotics/RT2ActionTokenizer.cs`:
- Around line 86-90: Validate inputs for exact expected shapes instead of only
checking minimum length: in EncodeAction ensure continuousAction.Length ==
ActionDim and throw ArgumentException (include actual length and expected
ActionDim using nameof(continuousAction)), and apply the same pattern to the
other tokenizer entry points noted in the review (e.g., GreedyActionToken and
any Encode/Decode token or logits methods referenced around lines 106-108,
127-129, 149-151, 170-171, 197-202) so each method rejects inputs that are too
short or too long; for tensor/array inputs check exact Length/shape, for
flattened decoder outputs validate expected vocabulary-length multiples, and use
clear ArgumentException/ArgumentNullException messages including parameter names
and observed vs expected sizes.

---

Outside diff comments:
In `@src/VisionLanguage/Robotics/RT2.cs`:
- Around line 395-418: DeserializeNetworkSpecificData currently mutates the
shared _options in place and CreateNewInstance passes that same reference to new
RT2<T> instances; instead, after reading the serialized fields in
DeserializeNetworkSpecificData create a fresh RT2Options instance (or clone the
original) and populate its fields (ModelPath, ImageSize, VisionDim, DecoderDim,
NumVisionLayers, NumDecoderLayers, NumHeads, ActionDimension, VocabSize,
PredictionHorizon, OnnxOptions), assign that new instance to _options, and
rebuild any derived state (recreate _tokenizer and _actionTokenizer and
reinitialize OnnxModel if ModelPath changed) so the deserialized object no
longer shares mutable options with others; similarly ensure CreateNewInstance
passes a copy/new RT2Options to the RT2<T> constructor rather than the original
shared reference.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro

Run ID: 4413a7c2-7808-4941-87e8-0c02083e9e60

📥 Commits

Reviewing files that changed from the base of the PR and between 0c99861 and 43917c6.

📒 Files selected for processing (2)
  • src/VisionLanguage/Robotics/RT2.cs
  • src/VisionLanguage/Robotics/RT2ActionTokenizer.cs

Comment thread src/VisionLanguage/Robotics/RT2.cs Outdated
Comment thread src/VisionLanguage/Robotics/RT2.cs
Comment thread src/VisionLanguage/Robotics/RT2.cs Outdated
Comment thread src/VisionLanguage/Robotics/RT2.cs
Comment thread src/VisionLanguage/Robotics/RT2.cs Outdated
Comment thread src/VisionLanguage/Robotics/RT2ActionTokenizer.cs Outdated

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PR #1430 review (CodeRabbit minor): the python block under the script
hardcoded the release-link host as 'ooples/AiDotNet'. The shell side
already respects GITHUB_REPOSITORY/REPO overrides for gh CLI invocation,
but the generated CHANGELOG lines didn't — so any run with the env var
overridden (forks, downstream mirrors, ci-on-clone testing) produced a
CHANGELOG full of dead links pointing at ooples/AiDotNet/releases/tag/…
instead of the actual repo.

Pass $REPO into the python heredoc as a second positional arg and
use it for the release-link format string.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

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franklinic and others added 2 commits May 22, 2026 20:56
…1430)

PR #1430 review (CodeRabbit minor): the ArgumentOutOfRangeException
message listed 'Mean, WeightedAverage, Median' but the switch above
actually handles WeightedAverage, GeometricMean, Maximum, Median —
'Mean' is not a mode, GeometricMean and Maximum were missing.
Reporters following the error message would try invalid values like
'Mean' instead of the actual GeometricMean / Maximum cases.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…e (PR #1430)

PR #1430 review (CodeRabbit minor): the exception said
'ExponentialMovingAverage' but the actual OnlineUpdateMode enum member
is 'EMA'. Callers troubleshooting an invalid value would type the
fully-spelled name from the error and still get the same exception.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Copilot AI review requested due to automatic review settings May 23, 2026 00:57
PR #1430 review (CodeRabbit minor): the federal-use paragraph was a
fourth child of the 3-column pricing grid, so on md+ breakpoints it
got squeezed into a phantom fourth column instead of rendering
full-width beneath the cards. Move it OUT of the grid container so
it lives as a sibling paragraph below; the existing max-w-3xl
mx-auto + text-center continue to center it under the pricing cards.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

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franklinic and others added 2 commits May 22, 2026 21:03
PR #1430 review (CodeRabbit major): the previous commit converted
PipelineParallelModel's ctor throw from NotImplementedException to
NotSupportedException (audit finding #10 — Selective/Full recompute
strategies are not-currently-supported configurations, not missing
implementations). The matching test still asserted the old type
and would fail; update it and document the rationale.

External callers catching NotImplementedException on this constructor
need to migrate to NotSupportedException. Documenting that in this
test's comment + the original audit commit message rather than a
separate release-notes entry — there's no public API consumer of
RecomputeStrategy.Selective/Full pipeline checkpointing yet (the
feature isn't shipped), so the migration window is empty.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…s (PR #1430)

PR #1430 review (CodeRabbit major): the per-layer comparison loop
iterated up to network.Layers.Count, throwing IndexOutOfRangeException
on line 58 when cloned.Layers.Count < network.Layers.Count. That's
EXACTLY the failure mode this repro tool exists to diagnose, so it
lost the per-layer diagnostics callers needed.

- Iterate up to System.Math.Min(orig, cloned) so the loop never
  out-of-bounds the cloned side.
- After the shared range, emit one log line per layer that's MISSING
  on either side so the output still shows which layers got dropped.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Copilot AI review requested due to automatic review settings May 23, 2026 01:04

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franklinic and others added 2 commits May 22, 2026 21:08
…exit paths (PR #1430)

PR #1430 review (CodeRabbit major): the early 'return 1' paths after
each Phase B/C/D failure skipped deterministic cleanup for log (and
plan, once Phase C had succeeded). Wrap the whole main body in a
try/finally so:
  - log.Dispose() runs on every exit (flushes the .log file before
    the process exits — important for diagnostic perf-1305-compile-
    phases.log which is the entire point of the tool).
  - plan?.Dispose() runs once Phase C populated it, regardless of
    whether subsequent phases throw.
  - scope?.Dispose() runs after the Phase B trace block populates it,
    rather than the previous duplicated scope?.Dispose() calls in
    each catch arm.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…igger with new PATCH policy (PR #1430)

PR #1430 review (CodeRabbit major × 3): the audit-2026-05 finding #18
remediation correctly changed the bump-analyzer step in
.github/workflows/automated-release.yml to map
fix/perf/refactor/docs/etc. to PATCH instead of MINOR, but three
sibling docs/triggers still encoded the OLD policy and contradicted
the new code path:

1. .github/VERSIONING.md "MINOR Version Bump" section still listed
   fix/refactor/perf/docs alongside feat:, and the "Commit Types"
   table at the bottom said "fix → MINOR / test → None". Updated:
   - MINOR section now only lists feat: (semver.org §7 is explicit
     about this — only new features bump MINOR).
   - Commit-types table now maps fix/refactor/perf/docs/test/chore/
     style/ci/build/revert all to PATCH.

2. .github/workflows/automated-release.yml trigger filter ignored
   '**.md' and 'docs/**', so docs-only commits never ran this
   workflow — making the docs:→PATCH rule at the analyzer step
   unreachable. Drop those path-ignores (kept only the genuine
   non-release files like ISSUE_TEMPLATE/.gitignore/.editorconfig)
   with an in-place comment explaining why so this doesn't drift
   back in.

3. CONTRIBUTING.md's "Valid Types and Version Impact" listed
   fix/docs/refactor/perf as MINOR and test/chore/ci/style as
   None. Updated to match VERSIONING.md and the workflow analyzer
   exactly. Added a paragraph pointing at VERSIONING.md as the
   authoritative source so future drift fails the next reviewer's
   "does this match VERSIONING.md?" check.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

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franklinic and others added 2 commits May 22, 2026 21:23
… shapes, internal helpers (PR #1430)

PR #1430 review (CodeRabbit): six unresolved threads on RT2.cs and
RT2ActionTokenizer.cs addressed in one commit because they're tightly
coupled (the embedding fix relies on a real EmbeddingLayer being
allocated in the ctor, which forces the ActionTokenizer-visibility
change to keep the public-facade boundary clean):

1. CRITICAL — synthetic sin/cos token embeddings replaced with a
   learned EmbeddingLayer<T> that the encoder + decoder + future
   weight-tied LM head share. Per Brohan et al. 2023 §3.1 RT-2's text
   tokens AND action-bin tokens flow through the SAME PaLI/PaLM-X
   embedding table; the previous deterministic sinusoidal projection
   wasn't model-faithful and decoupled the input representation from
   the vocab head's training signal. EmbedInstructionTokens +
   AppendActionTokenEmbedding now both go through _tokenEmbedding.

2. CRITICAL — GenerateFromImage(image, prompt) was silently DROPPING
   the prompt in ONNX mode (single-input ONNX export, vision-only).
   Now throws NotSupportedException when prompt is non-blank, with a
   message pointing at the native-mode constructor. PredictAction
   ALSO fails-fast in ONNX mode rather than running the native decode
   path with no ONNX weights backing it (which would silently produce
   actions from random native init while user thinks they're using
   the loaded checkpoint).

3. CRITICAL — Layers.Count / 2 encoder/decoder boundary heuristic
   for custom architectures replaced with a fail-fast
   NotSupportedException pointing at the right next step (add
   EncoderLayerCount to RT2Options). The heuristic happened to be
   correct for the default topology but would silently misroute
   layers on any asymmetric vision/decoder split.

4. MAJOR — Train() wraps TrainWithTape in try/finally so
   SetTrainingMode(false) runs even if Train throws. Otherwise a
   NaN-gradient or optimizer-state exception left the model stuck
   in training mode for the next Predict, silently flipping dropout
   / batchnorm semantics.

5. MAJOR — ActionTokenizer property changed from public to internal.
   It's a plumbing/helper type; the facade API (PredictAction,
   GenerateFromImage) is the supported surface. Tests / training-
   data-prep code can still access it via InternalsVisibleTo.

6. CRITICAL — RT2ActionTokenizer length guards tightened from
   "< ActionDim" to "== ActionDim" everywhere (EncodeAction ×2,
   EncodeHorizon, DecodeAction, DecodeHorizon). Silently truncating
   extra dimensions made misaligned callers (wrong ActionDim,
   flattened multi-step tensor) look valid. GreedyActionToken now
   demands logits.Length == VocabSize so a flattened multi-position
   decoder output gets rejected with a clear "slice to last position
   first" diagnostic instead of being silently argmax'd over the
   first position's bin window. New VocabSize property exposes the
   contract value (= TokenIdEndExclusive per paper §3.2).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…fail-fast on placeholder weights (PR #1430)

PR #1430 review (CodeRabbit): six unresolved threads across JanusPro.cs,
JanusVQCodebook.cs, and JanusProOptions.cs addressed together because
the VQCodebook fail-fast change cascades into JanusPro.GenerateImage's
guard, and the option-validation closes the same prompt-comes-in-bad
shape of bug.

1. MAJOR — JanusVQCodebook<T> made internal (was public sealed) +
   JanusPro.VQCodebook property made internal (was public). VQCodebook
   is generation plumbing; the facade API exposes GenerateImage. Tests
   reach through InternalsVisibleTo per the existing codebase
   convention.

2. CRITICAL — JanusVQCodebook constructor no longer seeds _codebook
   with deterministic spectral placeholder values. Allocates the
   storage but leaves it zero-initialised; new IsLoaded flag + new
   private EnsureLoaded() check throw a clear
   InvalidOperationException from Lookup / LookupGrid / Quantize
   until LoadCodebook has imported a real trained codebook. The
   previous placeholder produced structured-but-meaningless
   generation that violated paper fidelity; failing fast forces a
   real checkpoint to be loaded.

3. CRITICAL — JanusPro.GenerateImage now fails fast in native mode
   when the VQ codebook hasn't been loaded. Validation message points
   at the DeepSeek-AI/Janus-Pro checkpoint and the ONNX-mode
   alternative for users who can't load native weights.

4. MAJOR — JanusPro.GenerateImage now validates textDescription
   (rejects null/empty/whitespace at the API boundary) before
   tokenization, with a message explaining the contract.

5. CRITICAL — JanusPro._vqCodebook changed from readonly to
   non-readonly + rebuilt inside DeserializeNetworkSpecificData
   against the just-deserialized NumVisualTokens /
   CodebookEmbeddingDim. The previous readonly field kept the
   constructor-time dimensions after deserialization, producing a
   shape mismatch on every subsequent Lookup. (Codebook entries
   themselves still need a separate LoadCodebook call — they're not
   in the serialization stream — but at least the dimensions match
   the deserialized config.)

6. MAJOR — JanusProOptions.NumGenerationTokens / CodebookEmbeddingDim /
   CfgScale gain backing fields + setter validation. Zero or
   negative NumGenerationTokens / CodebookEmbeddingDim now throw
   ArgumentOutOfRangeException; CfgScale rejects NaN/Infinity/non-
   positive. Previously these flowed unchecked into downstream
   generation paths where they'd crash with much less actionable
   diagnostics. Pattern mirrors SpikingNeuralNetworkOptions /
   EchoStateNetwork options for consistency.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Copilot AI review requested due to automatic review settings May 23, 2026 01:30

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@ooples
ooples merged commit 6218734 into master May 23, 2026
34 of 47 checks passed
@ooples
ooples deleted the audit/2026-05-full-remediation branch May 23, 2026 02:32
ooples pushed a commit that referenced this pull request May 23, 2026
Brings PRs #1421 (SenseVoice / Paraformer BN→LN), #1424 (NN test
failures), and #1430 (audit 2026-05 remediation) into this branch.

Two add/add conflicts resolved by accepting HEAD (this branch's
post-review versions):

- src/NeuralNetworks/Layers/CifAlignmentLayer.cs: keep this
  branch's `SupportsTraining => false` honest-contract version
  (review thread PRRT_kwDOKSXUF86EQONV) and the `threshold >= 1.0`
  guard (PRRT_kwDOKSXUF86EQONS). Master had the earlier
  `SupportsTraining => true` + `threshold > 0` versions from the
  cherry-pick of #1421's CIF implementation; the post-review
  hardening on this branch supersedes them.

- tests/AiDotNet.Tests/Performance/SenseVoiceTrainStepProfile.cs:
  keep this branch's assertion-bearing profile test
  (PRRT_kwDOKSXUF86EMZ2n / EMZ2t / EMZ3F) plus the `$`-prefix
  interpolation fix (PRRT_kwDOKSXUF86EQONX) over master's earlier
  log-only version. The post-review test enforces real budget
  assertions for ctor / warm-Predict / median-warm-Train /
  ForwardForTraining phases.

No other files conflicted — VERSIONING.md, CONTRIBUTING.md,
automated-release.yml, CHANGELOG.md, SECURITY.md, NuGet.config etc.
all merged cleanly because both sides edited disjoint regions (or
this branch had the same edits already from cherry-picks).

Build: dotnet build src/AiDotNet.csproj passes 0 errors / 11477
warnings (warnings unchanged from master tip).
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