Open source for Computational Biology
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Repositories
- opencga Public
An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
- java-common-libs Public
OpenCB common libs project. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
- jsorolla Public
JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
- cellbase Public
High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
- biodata Public
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
- ci-core Public archive
Core CI/CD components for OpenCB and Xetabase projects. Centralized reusable GitHub Actions, composite actions, and internal workflows implementing our organization’s opinionated build, test, and release rules.
- argus Public archive
A Python engine for testing and benchmarking REST web services. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
- oskar Public archive
Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics
- bionetdb Public archive
BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database
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