Can't install h5py on MacOs M1 #6093

Installing dependencies from lock file

Package operations: 12 installs, 0 updates, 0 removals

  • Installing h5py (2.10.0): Failed

  EnvCommandError

  Command ['/Users/xxx/Library/Caches/pypoetry/virtualenvs/esi-syncopy-vESaVMMA-py3.8/bin/pip', 'install', '--no-deps', 'file:///Users/xxx/Library/Caches/pypoetry/artifacts/e1/c6/e9/c8624c01cae03e2dcc08141108abf4864b207a81f6baec2b7d2f519af9/h5py-2.10.0.tar.gz'] errored with the following return code 1, and output:
  Processing /Users/xxx/Library/Caches/pypoetry/artifacts/e1/c6/e9/c8624c01cae03e2dcc08141108abf4864b207a81f6baec2b7d2f519af9/h5py-2.10.0.tar.gz
    Preparing metadata (setup.py): started
    Preparing metadata (setup.py): finished with status 'done'
  Building wheels for collected packages: h5py
    Building wheel for h5py (setup.py): started
    Building wheel for h5py (setup.py): finished with status 'error'
    error: subprocess-exited-with-error

    × python setup.py bdist_wheel did not run successfully.
    │ exit code: 1
    ╰─> [8 lines of output]
        /Users/xxx/Library/Caches/pypoetry/virtualenvs/esi-syncopy-vESaVMMA-py3.8/lib/python3.8/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
          warnings.warn(
        running bdist_wheel
        running build
        running build_py
        running build_ext
        Loading library to get version: libhdf5.dylib
        error: dlopen(libhdf5.dylib, 0x0006): tried: 'libhdf5.dylib' (no such file), '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file), '/private/var/folders/wq/b2v4yh29055d_mcsphwlmk8c0000gp/T/pip-req-build-s81x_dn1/libhdf5.dylib' (no such file), '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file)
        [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for h5py
    Running setup.py clean for h5py
  Failed to build h5py
  Installing collected packages: h5py
    Running setup.py install for h5py: started
    Running setup.py install for h5py: finished with status 'error'
    error: subprocess-exited-with-error

    × Running setup.py install for h5py did not run successfully.
    │ exit code: 1
    ╰─> [10 lines of output]
        /Users/xxx/Library/Caches/pypoetry/virtualenvs/esi-syncopy-vESaVMMA-py3.8/lib/python3.8/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
          warnings.warn(
        running install
        /Users/xxx/Library/Caches/pypoetry/virtualenvs/esi-syncopy-vESaVMMA-py3.8/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
          warnings.warn(
        running build
        running build_py
        running build_ext
        Loading library to get version: libhdf5.dylib
        error: dlopen(libhdf5.dylib, 0x0006): tried: 'libhdf5.dylib' (no such file), '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file), '/private/var/folders/wq/b2v4yh29055d_mcsphwlmk8c0000gp/T/pip-req-build-s81x_dn1/libhdf5.dylib' (no such file), '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file)
        [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
  error: legacy-install-failure

  × Encountered error while trying to install package.
  ╰─> h5py

  note: This is an issue with the package mentioned above, not pip.
  hint: See above for output from the failure.


  at ~/.poetry/lib/poetry/utils/env.py:1195 in _run
      1191│                 output = subprocess.check_output(
      1192│                     cmd, stderr=subprocess.STDOUT, **kwargs
      1193│                 )
      1194│         except CalledProcessError as e:
    → 1195│             raise EnvCommandError(e, input=input_)
      1196│
      1197│         return decode(output)
      1198│
      1199│     def execute(self, bin, *args, **kwargs):