Recommended way for running COSMOS

[an-altosian]

Dear COSMOS team,

Thanks for providing such an amazing tool. It seems like recently there were many major updates in COSMOS but I am struggling with finding the latest guidance for running the tool. Could you please point me to the latest tutorials? Thanks!

[adugourd]

Well you are in the right place :)

You can follow this script: https://github.com/saezlab/COSMOS_basic/blob/main/scripts/net_compr_MOON.R
there is also an RMD version if you prefer.

For more details, check out the latest pre-print of cosmos: https://www.biorxiv.org/content/10.1101/2024.07.15.603538v1

Cheers,

Aurelien