Releases: smithlabcode/falco
Release list
v2.0.3
What's Changed
- Fixing a bug that could cause a race condition for small input files of the kind used for unit tests.
Binaries and packages
Linux
macOS
Linux packages
Source code
Full Changelog: v2.0.2...v2.0.3
v2.0.2
What's Changed
- Falco can output a file for direct input to preseq for library complexity analysis.
- Building on macOS now works more smoothly using Apple Clang.
- Falco can now accept SAM and FASTQ from standard input, e.g., piped from another tool.
- The generated HTML report automatically groups bases for reads longer than 1000 bp to ensure they can viewed.
Binaries and packages
Linux
macOS
Linux packages
Source code
v2.0.1
What's Changed
- GC content distribution across reads improved for smoothing more similar to Falco v1
- Some HTML improvements
- Adding
--bisulfitemore from Falco v1 - Original duplicates mode now enabled with a command line flag
--orig-dups - Bugfix: occasional issue with parsing SAM (though not BAM) format quality scores was fixed
Binaries and packages
Linux
macOS
Linux packages
Source code
Full Changelog: v2.0.0...v2.0.1
v2.0.0
What's Changed
- The codebase has been fully rewritten
- Output values for GC content and duplication analysis have changed (output formats are the same)
Binaries and packages
Linux
macOS
Linux packages
Source code
v1.3.2
The correct files to download are either falco-1.3.2.zip or falco-1.3.2.tar.gz
Please do not download the "Source code" files automatically generated by GitHub, as they do not contain all files necessary for compilation.
What's Changed
- Bugfix for identifying malformed fastq file records (e.g., empty lines)
Full Changelog: v1.3.1...v1.3.2
v1.3.1
The correct files to download are either falco-1.3.1.zip or falco-1.3.1.tar.gz
Please do not download the "Source code" files automatically generated by GitHub, as they do not contain all files necessary for compilation.
What's Changed
- Updating hardcoded default adapter set to include PolyA and PolyG
Full Changelog: v1.3.0...v1.3.1
v1.3.0
The correct files to download are either falco-1.3.0.zip or falco-1.3.0.tar.gz
Please do not download the "Source code" files automatically generated by GitHub, as they do not contain all files necessary for compilation.
What's Changed
- Fixing newlines in configuration files
- Requiring a flag to report the progress bar
- Improvements to output format
Full Changelog: v1.2.5...v1.3.0
v1.2.5 - 11/21/2024
The correct files to download are either falco-1.2.5.zip or falco-1.2.5.tar.gz
Please do not download the "Source code" files automatically generated by GitHub, as they do not contain all files necessary for compilation.
What's Changed
- Adding option to exit without error on empty input by @andrewdavidsmith in #78
Full Changelog: v1.2.4...v1.2.5
Contributors
Assets 4
v1.2.4 - 9/25/2024
The correct files to download are either falco-1.2.4.zip or falco-1.2.4.tar.gz
Please do not download the "Source code" files automatically generated by GitHub, as they do not contain all files necessary for compilation.
What's Changed
- Changing adapter matching so that self-overlapping patterns are only matched once per read by @andrewdavidsmith in #71
- Fixing bug in adapter identification for BAM format by @andrewdavidsmith in #72
Full Changelog: v1.2.3...v1.2.4
Contributors
Assets 4
v1.2.3 - 8/11/2024
The correct files to download are either falco-1.2.3.zip or falco-1.2.3.tar.gz
Please do not download the "Source code" files automatically generated by GitHub, as they do not contain all files necessary for compilation.
What's Changed
- Fixed a bug that caused access past ends of adapters in some situations
- Removed progress bar for BAM input because we can't be sure it's accurate
- Fixed a bug involving wrong strands for reads in BAM files (issue #59)
- Fixed a bug that attempted to build for BAM support even when HTSLib was not available
- Updated adapter and contaminant files from FastQC v0.12.0 (issue #64)