Simulate ARGs and genomic sequence data using population genetic models
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Sep 1, 2026 - Python
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msprime
Here are 5 public repositories matching this topic...
Genotype likelihood simulator for VCF/BCF files
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May 7, 2025 - C++
Simulating and estimating the effect of gene transfer on bacterial pangenomes.
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Dec 12, 2025 - Jupyter Notebook
Estimating Population Genetic Parameters Using Neural Networks and Genetic Simulations
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Dec 6, 2024 - Jupyter Notebook
Official CUDA implementation of "Streaming Right Multiplication over Grammar-Compressed Matrices: A Memory-Bounded GPU Engine for Genotype and Graph Data" (ALENEX 2027). Enables memory-bounded matrix-vector products and graph algorithms on massive dataset via grammar compression.
wikidata graph-processing polygenic-risk-scores cuda-kernels spmv 1000genomes matrix-vector-multiplication grammar-compression msprime software-heritage-dag
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Sep 11, 2026 - Python
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