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Vectorise edge_effect using tskit 1.0 mutation arrays #193

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jeromekelleher merged 2 commits into from
Sep 2, 2026
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Vectorise edge_effect using tskit 1.0 mutation arrays #193

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eca1b6d
Vectorise edge_effect using tskit 1.0 mutation arrays
jeromekelleher Sep 2, 2026
6c9d01f
Use Mutation.inherited_state instead of computing it
jeromekelleher Sep 2, 2026
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6 changes: 6 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,12 @@ In development
{pr}`189`
- Added `edge_effect` to compute introduced effects on edges {pr}`189`

### Breaking changes

- `genetic_value` and `edge_effect` now raise a `ValueError` if a `site_id` in
the trait dataframe is not a valid site ID in the tree sequence. Negative
values previously wrapped around to the end of the site table {pr}`193`

### Documentation

- Added a worked example relating causal-allele effects,
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