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fixed get_views_contain methods with string query, more informative r…
* justification for dropping multiversion documentation: documentation for old versions of the SDK was added via #167, but since then the versioning scheme of MMIF and vocab have dramatically changed, and developing a CLAMS app targeting at an older version of MMIF spec is no longer a recommended practice. (Also see 9cb386f. Namely "unpinned" req.txt, building sdist for old git tags causes many problems)
…on numpy, fixed type hints, more test coverage
adding generalized sequence smoothing helpers
more fix for `start`/`end` getters
* bring this back since some retrofitting bugfixes pushed to the multiversion fork, and now building old docs are not too buggy anymore
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #268 +/- ##
==========================================
- Coverage 92.05% 89.14% -2.92%
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Files 9 10 +1
Lines 1108 1253 +145
==========================================
+ Hits 1020 1117 +97
- Misses 88 136 +48
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keighrim
marked this pull request as draft
March 29, 2024 10:06
…e checks for `view.metadata.parameters`
`ViewMetadata` updated for `appConfiguration` support
keighrim
marked this pull request as ready for review
March 31, 2024 21:30
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Overview
This release includes changes from MMIF spec 1.0.3 and 1.0.4, and a new helper module to handle sequence annotations
Additions
mmif.utils.sequence_helpermodule (fixing adding generalized sequence smoothing helpers #267) is added to provideclassificationprops) into a list of reals (scores by labels), can be combined with the label re-mapper mentioned abovesmooth_outlying_short_intervals(): a simple smoothing algorithm by trimming "short" outlier sequencesviews[].metadata.appConfigurationfield (recording runtime parameters and runtime configurations mmif#208 & support the newappConfiguration#269)Changes
targetsare no longer require the targets list is already sorted